Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 13 threads; openjdk version "17.0.14" 2025-01-21; /home/estsoi/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage3/estsoi/condensin_degron/7_A1 -s none -z /home/estsoi/mm10.fasta -D /home/estsoi/juicer1.6_compact -c /storage3/estsoi/condensin_degron/7_A1.cool -q 1000 -n -t 13                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  35,315,124
 Normal Paired: 18,964,020 (53.70%)
 Chimeric Paired: 10,888,077 (30.83%)
 Chimeric Ambiguous: 4,690,038 (13.28%)
 Unmapped: 772,989 (2.19%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 29,852,097 (84.53%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-03-06T13:06:40,368]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 27,839,166 (78.83%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 2,012,931 (5.70%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,707,212 (13.33% / 16.91%)
Hi-C Contacts: 23,131,954 (65.50% / 83.09%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 13% - 61% - 13% - 13%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 42%
 Cis/all (FF and RR orient): 79.2%
Inter-chromosomal: 2,783,018  (7.88% / 10.00%)
Intra-chromosomal: 20,348,936  (57.62% / 73.09%)
Short Range (<20,000bp): 13,187,986  (37.34% / 47.37%)
Long Range (>20,000bp): 7,160,950  (20.28% / 25.72%)