Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 13 threads; openjdk version "17.0.14" 2025-01-21; /home/estsoi/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage3/estsoi/condensin_degron/7_C1 -s none -z /home/estsoi/mm10.fasta -D /home/estsoi/juicer1.6_compact -c /storage3/estsoi/condensin_degron/7_C1.cool -q 1000 -n -t 13                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  36,780,834
 Normal Paired: 20,044,995 (54.50%)
 Chimeric Paired: 10,648,897 (28.95%)
 Chimeric Ambiguous: 5,018,391 (13.64%)
 Unmapped: 1,068,551 (2.91%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 30,693,892 (83.45%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-03-06T19:13:45,040]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 29,038,163 (78.95%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 1,655,729 (4.50%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 5,682,146 (15.45% / 19.57%)
Hi-C Contacts: 23,356,017 (63.50% / 80.43%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 14% - 59% - 14% - 14%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 38%
 Cis/all (FF and RR orient): 77.8%
Inter-chromosomal: 3,190,475  (8.67% / 10.99%)
Intra-chromosomal: 20,165,542  (54.83% / 69.44%)
Short Range (<20,000bp): 12,473,910  (33.91% / 42.96%)
Long Range (>20,000bp): 7,691,632  (20.91% / 26.49%)