Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 13 threads; openjdk version "17.0.14" 2025-01-21; /home/estsoi/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage3/estsoi/condensin_degron/7_C2 -s none -z /home/estsoi/mm10.fasta -D /home/estsoi/juicer1.6_compact -c /storage3/estsoi/condensin_degron/7_C2.cool -q 1000 -n -t 13                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  28,224,507
 Normal Paired: 14,726,057 (52.17%)
 Chimeric Paired: 8,656,058 (30.67%)
 Chimeric Ambiguous: 4,121,211 (14.60%)
 Unmapped: 721,181 (2.56%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 23,382,115 (82.84%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-03-06T21:22:25,449]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 22,291,676 (78.98%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 1,090,439 (3.86%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 3,885,920 (13.77% / 17.43%)
Hi-C Contacts: 18,405,756 (65.21% / 82.57%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 15% - 55% - 15% - 15%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 35%
 Cis/all (FF and RR orient): 80.8%
Inter-chromosomal: 2,285,562  (8.10% / 10.25%)
Intra-chromosomal: 16,120,194  (57.11% / 72.31%)
Short Range (<20,000bp): 9,591,071  (33.98% / 43.03%)
Long Range (>20,000bp): 6,529,123  (23.13% / 29.29%)