Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 13 threads; openjdk version "17.0.14" 2025-01-21; /home/estsoi/juicer1.6_compact/scripts/juicer.sh -g mm10 -d /storage3/estsoi/condensin_degron/11_C2 -s none -z /home/estsoi/mm10.fasta -D /home/estsoi/juicer1.6_compact -c /storage3/estsoi/condensin_degron/11_C2.cool -q 1000 -n -t 13                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
Sequenced Read Pairs:  41,925,651
 Normal Paired: 22,527,356 (53.73%)
 Chimeric Paired: 12,649,919 (30.17%)
 Chimeric Ambiguous: 5,579,144 (13.31%)
 Unmapped: 1,169,232 (2.79%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 35,177,275 (83.90%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2025-03-06T10:31:53,547]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 33,426,598 (79.73%)
PCR Duplicates: 0 (0.00%)
Optical Duplicates: 1,750,677 (4.18%)
Library Complexity Estimate: 0
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 6,117,127 (14.59% / 18.30%)
Hi-C Contacts: 27,309,471 (65.14% / 81.70%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type intra chrom %(L-I-O-R): 14% - 59% - 14% - 14%
 Pair Type inter chrom %(L-I-O-R): 25% - 25% - 25% - 25%
 DE: 40%
 Cis/all (FF and RR orient): 79.7%
Inter-chromosomal: 3,337,139  (7.96% / 9.98%)
Intra-chromosomal: 23,972,332  (57.18% / 71.72%)
Short Range (<20,000bp): 15,101,954  (36.02% / 45.18%)
Long Range (>20,000bp): 8,870,378  (21.16% / 26.54%)